Browsing by Author "Tapia, Rodrigo"

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    A Deficiency in the Flavoprotein of Arabidopsis Mitochondrial Complex II Results in Elevated Photosynthesis and Better Growth in Nitrogen-Limiting Conditions
    (AMER SOC PLANT BIOLOGISTS, 2011) Fuentes, Daniela; Meneses, Marco; Nunes Nesi, Adriano; Araujo, Wagner L.; Tapia, Rodrigo; Gomez, Isabel; Holuigue, Loreto; Gutierrez, Rodrigo A.; Fernie, Alisdair R.; Jordana, Xavier
    Mitochondrial complex II (succinate dehydrogenase [SDH]) plays roles both in the tricarboxylic acid cycle and the respiratory electron transport chain. In Arabidopsis (Arabidopsis thaliana), its flavoprotein subunit is encoded by two nuclear genes, SDH1-1 and SDH1-2. Here, we characterize heterozygous SDH1-1/sdh1-1 mutant plants displaying a 30% reduction in SDH activity as well as partially silenced plants obtained by RNA interference. We found that these plants displayed significantly higher CO2 assimilation rates and enhanced growth than wild-type plants. There was a strong correlation between CO2 assimilation and stomatal conductance, and both mutant and silenced plants displayed increased stomatal aperture and density. By contrast, no significant differences were found for dark respiration, chloroplastic electron transport rate, CO2 uptake at saturating concentrations of CO2, or biochemical parameters such as the maximum rates of carboxylation by Rubisco and of photosynthetic electron transport. Thus, photosynthesis is enhanced in SDH-deficient plants by a mechanism involving a specific effect on stomatal function that results in improved CO2 uptake. Metabolic and transcript profiling revealed that mild deficiency in SDH results in limited effects on metabolism and gene expression, and data suggest that decreases observed in the levels of some amino acids were due to a higher flux to proteins and other nitrogen-containing compounds to support increased growth. Strikingly, SDH1-1/sdh1-1 seedlings grew considerably better in nitrogen-limiting conditions. Thus, a subtle metabolic alteration may lead to changes in important functions such as stomatal function and nitrogen assimilation.
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    Actas Seminario Interdisciplina en la UC
    (2012) Flores, Luis; Haye, Andrés; Rebolledo, Rolando; Araos, Consuelo; Parra, Catalina de la; Rivera, Daniela; Vergara, Alejandro; San Martín, Ernesto; Min, Wonjung; Funk, regina; Onell, Roberto; Holmes, Robert; García Huidobro, Vicente; Cádiz, Rodrigo; Cuadra, Patricio de la; Sylleros, Álvaro; Hermosilla, Katherine; Vega, Patricia; Ibarra, Macarena; Ramírez, Cecilia; Bonomo, Umberto; Torres, Marisa; Tapia, Rodrigo; Cottet, Pablo; Rojas Lasch, Carolina; Haye M., Andrés
    Publicación de trabajos derivados de un seminario realizado el 14 de diciembre de 2011, patrocinado por la Vicerrectoría de Investigación, la Facultad de Ciencias Sociales y Facultad de Filosofía, con el fin de reunir y poner en diálogo diversas experiencias de interdisciplina en la universidad y así favorecer su reconocimiento como estrategia de conocimiento, reflexionar sus limitaciones y potenciar su crecimiento. Editores: Carolina Rojas y Andrés Haye. Producción y diseño: Laboratorio de Hipermedios, Facultad de Letras PUC, Pablo Chiuminatto, Rodrigo del Río. Corrección de textos: Loreto Fernández. Organización del Seminario: Carolina Rojas, Andrés Haye, Patricio Miranda, Pablo Herraz, Gabriela Rubilar.
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    Antigenic characterization of novel H1 influenza A viruses in swine
    (2020) Tapia, Rodrigo; Torremorell, Montserrat; Culhane, Marie; Medina, Rafael A.; Neira, Victor
    Novel H1N2 influenza A viruses (IAVs) in swine have been identified in Chile co-circulating with pandemic H1N1 2009-like (A(H1N1)pdm09-like) viruses. The objective of this study was to characterize antigenically the swine H1 IAVs circulating in Chile. Genetic analysis based on the HA1 domain and antigenic analysis by hemagglutination inhibition assay were carried out. Three antigenic clusters were identified, named Chilean H1 A (ChH1A), Chilean H1 B (ChH1B), and A(H1N1)pdm09-like. The antigenic sites of ChH1A and ChH1B strains were 10-60% distant from those of commercial vaccine strains at the amino acid sequence level. Antigenic variants were identified within the clusters ChH1A and A(H1N1)pdm09-like. Substitutions in the main antigenic sites (E153G in Sa, Q193H in Sb, D168N in Ca1, P137S in Ca2, and F71L in Cb) were detected in variants from the ChH1A cluster, whereas only a single substitution in antigenic site Sa (G155E) was detected in variants from A(H1N1)pdm09-like cluster, which confirms the importance to carrying out antigenic analyses in addition to genetic analyses to evaluate control measures such as vaccination. These results highlight the need to update vaccines for swine in Chile and the importance of continued surveillance to determine the onward transmission of antigenic variants in Chilean pig populations.
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    Avian orthoavulavirus 1 (Newcastle Disease virus) antibodies in five penguin species, Antarctic peninsula and Southern Patagonia
    (2021) Ariyama, Naomi; Tapia, Rodrigo; Godoy, Claudia; Aguero, Belen; Valdes, Valentina; Berrios, Felipe; Garcia Borboroglu, Pablo; Putz, Klemens; Alegria, Raul; Barriga, Gonzalo P.; Medina, Rafael; Neira, Victor
    Avian orthoavulavirus 1 (AOaV-1) causes Newcastle disease, one of the most important and contagious infections in poultry, where migratory birds can play a key role as a reservoir. Seven hundred and seven serum samples were collected from five penguin species (King, Magellanic, Gentoo, Chinstrap and Adelie penguins) in the Antarctic and Sub-Antarctic zones. Using a competitive ELISA to detect antibodies against AOaV-1, we identified positive individuals in all penguin species. The Magellanic penguin showed the highest seropositivity rate (30.3%), suggesting it could be a natural reservoir of this virus. At the Antarctic zones, Chinstrap penguin showed the highest occurrence (7.5%). Interesting, positive sera was only obtained in Sub-Antarctic and Northern zones at the Antarctic peninsula, no seroreactivity was observed in Southern locations. Further studies are needed to establish the role of these penguin species in the epidemiology of the AOaV-1 and determine the effects of this virus in these populations.
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    Circulation patterns of human seasonal Influenza A viruses in Chile before H1N1pdm09 pandemic
    (2021) Mena, Juan; Tapia, Rodrigo; Verdugo, Claudio; Avendano, Luis; Parra-Castro, Paulina; Medina, Rafael A.; Barriga, Gonzalo; Neira, Victor
    Understanding the diversity and circulation dynamics of seasonal influenza viruses is key to public health decision-making. The limited genetic information of pre-pandemic seasonal IAVs in Chile has made it difficult to accurately reconstruct the phylogenetic relationships of these viruses within the country. The objective of this study was to determine the genetic diversity of pre-pandemic human seasonal IAVs in Chile. We sequenced the complete genome of 42 historic IAV obtained between 1996 and 2007. The phylogeny was determined using HA sequences and complemented using other segments. Time-scale phylogenetic analyses revealed that the diversity of pre-pandemic human seasonal IAVs in Chile was influenced by continuous introductions of new A/H1N1 and A/H3N2 lineages and constant viral exchange between Chile and other countries every year. These results provide important knowledge about genetic diversity and evolutionary patterns of pre-pandemic human seasonal IAVs in Chile, which can help design optimal surveillance systems and prevention strategies. However, future studies with current sequences should be conducted.
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    Cross-protection of commercial vaccines against Chilean swine influenza A virus using the guinea pig model as a surrogate
    (2023) Tapia, Rodrigo; Mena, Juan; Garcia, Victoria; Culhane, Marie; Medina, Rafael A.; Neira, Victor
    Influenza A virus poses a significant threat to public health and the swine industry. Vaccination is the primary measure for controlling the disease, but the effectiveness of vaccines can vary depending on the antigenic match between vaccine strains and circulating strains. In Chile, H1N1pdm09 and other lineages H1N2 and H3N2 have been detected in pigs, which are genetically distinct from the strains included in commercial vaccines. This study aimed to evaluate the cross-protection by commercial vaccines against strains circulating in Chile using the guinea pig model. For this study, four circulating strains [A/swine/Chile/H1A-7/2014(H1N2), A/swine/Chile/H1B-2/2014(H1N2), A/swine/Chile/H1P-12/2015(H1N1), and A/swine/Chile/H3-2/2015(H3N2)] were selected. Guinea pigs were divided into vaccinated and control groups. The vaccinated animals received either a multivalent antigenically heterologous or monovalent homologous vaccine, while the control animals remained unvaccinated. Following vaccination, all animals were intranasally challenged, and nasal wash samples were collected at different time points post-infection. The results showed that the homologous monovalent vaccine-induced hemagglutinin-specific antibodies against the Chilean pandemic H1N1pdm09 strain. However, the commercial heterologous multivalent vaccine failed to induce hemagglutinin-specific antibody titers against the H1N2 and H3N2 challenge strains. Furthermore, the homologous monovalent vaccine significantly reduced the duration of viral shedding and viral titers specifically against the Chilean pandemic H1N1pdm09 strain and heterologous multivalent vaccine only partial. These findings highlight the importance of regularly updating vaccine strains to match the circulating field strains for effective control of swine influenza. Further research is needed to develop vaccines that confer broader protection against diverse strains of swine influenza A virus.
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    Novel Avulaviruses in Penguins, Antarctica
    (2017) Neira, Víctor; Tapia, Rodrigo; Verdugo, Claudio; Barriga, Gonzalo; Mor, Sunil; Fei Fan Ng, Terry; García, Victoria; Del Río, José; Rodríguez, Pedro; Medina, Rafael; Briceño, Cristóbal; González Acuña, Daniel
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    Novel influenza A viruses in pigs with zoonotic potential, Chile
    (2024) Tapia, Rodrigo; Brito, Barbara; Saavedra, Marco; Mena, Juan; Garcia-Salum, Tamara; Rathnasinghe, Raveen; Barriga, Gonzalo; Tapia, Karla; Garcia, Victoria; Bucarey, Sergio; Jang, Yunho; Wentworth, David; Torremorell, Montserrat; Neira, Victor; Medina, Rafael A.
    Novel H1N2 and H3N2 swine influenza A viruses (IAVs) have recently been identified in Chile. The objective of this study was to evaluate their zoonotic potential. We perform phylogenetic analyses to determine the genetic origin and evolution of these viruses, and a serological analysis to determine the level of cross-protective antibodies in the human population. Eight genotypes were identified, all with pandemic H1N1 2009-like internal genes. H1N1 and H1N2 were the subtypes more commonly detected. Swine H1N2 and H3N2 IAVs had hemagglutinin and neuraminidase lineages genetically divergent from IAVs reported worldwide, including human vaccine strains. These genes originated from human seasonal viruses were introduced into the swine population since the mid-1980s. Serological data indicate that the general population is susceptible to the H3N2 virus and that elderly and young children also lack protective antibodies against the H1N2 strains, suggesting that these viruses could be potential zoonotic threats. Continuous IAV surveillance and monitoring of the swine and human populations is strongly recommended.IMPORTANCEIn the global context, where swine serve as crucial intermediate hosts for influenza A viruses (IAVs), this study addresses the pressing concern of the zoonotic potential of novel reassortant strains. Conducted on a large scale in Chile, it presents a comprehensive account of swine influenza A virus diversity, covering 93.8% of the country's industrialized swine farms. The findings reveal eight distinct swine IAV genotypes, all carrying a complete internal gene cassette of pandemic H1N1 2009 origin, emphasizing potential increased replication and transmission fitness. Genetic divergence of H1N2 and H3N2 IAVs from globally reported strains raises alarms, with evidence suggesting introductions from human seasonal viruses since the mid-1980s. A detailed serological analysis underscores the zoonotic threat, indicating susceptibility in the general population to swine H3N2 and a lack of protective antibodies in vulnerable demographics. These data highlight the importance of continuous surveillance, providing crucial insights for global health organizations.
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    Replication kinetics of novel swine influenza A viruses: an approach to vaccine production
    (2024) Tapia, Rodrigo; Medina, Rafael; Neira, Victor
    Novel swine Influenza A viruses (IAVs) have been described in South America. The objective of this study was to evaluate the replication kinetics of novel swine IAVs as a first step in vaccine production. Different swine IAV lineages (H1N1, H1N2, and H3N2), infection doses (MOI: 1, 0.1, 0.01, 0.001, 0.0001, and 0.00001), harvest times (every 12 h), and substrates (MDCK and Vero cells) were used. For all IAV strains, MDCK cells were the most efficient substrate, generating titers of >= 128 HAU/50 mu L with an MOI of 0.00001 at 60 h post-infection. These data may be useful in vaccine- producing laboratories.